Android: only handle Intents after the app is initialized

The old code happened to work because this function only got called if
the app was already running, but the correct thing to do is to always
wait until we have first called back from C++ code, indicating that the
app is indeed fully initialized.

This way we only process the Intent in one place in the Java code.

Signed-off-by: Dirk Hohndel <dirk@hohndel.org>

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